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    denosine deaminases acting on tRNA [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839252, updated on 18-Sep-2024

    Summary

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    Official Full Name
    denosine deaminases acting on tRNA
    Primary source
    TAIR:AT1G01760
    Locus tag
    AT1G01760
    See related
    Araport:AT1G01760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTAD1; ortholog of yeast Tad1; T1N6.17; T1N6_17; TAD1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (276266..278599, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene adenylosuccinate synthetase Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene kinase with tetratricopeptide repeat domain-containing protein Neighboring gene ncRNA Neighboring gene actin depolymerizing factor 11 Neighboring gene ncRNA Neighboring gene propionyl-CoA carboxylase Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene K+ efflux antiporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress. Zhou W, et al. Nucleic Acids Res, 2013 Mar 1. PMID 23355609, Free PMC Article
    2. Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis. Zhou W, et al. Plant Physiol, 2014 Dec. PMID 25315605, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtTAD1 protein is exclusively localized in the nucleus.
      Title: Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331304.1
    NM_001331305.1
    NM_001331306.1
    NM_100059.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables tRNA-specific adenosine deaminase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables tRNA-specific adenosine-37 deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    denosine deaminases acting on tRNA
    NP_171681.3
    • adenosine deaminases;RNA binding;RNA binding;adenosine deaminases; FUNCTIONS IN: RNA binding, adenosine deaminase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      276266..278599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100059.3 → NP_171681.3  denosine deaminases acting on tRNA [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171681.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HU58, Q1PFZ4, Q9LQ80
      UniProtKB/TrEMBL
      A0A7G2DMT5
      Conserved Domains (1) summary
      smart00552
      Location:4 → 418
      ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)

    2. NM_001331304.1 → NP_001322029.1  denosine deaminases acting on tRNA [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W929, A0A1P8ASQ9, A0A384L277, A0A5S9S4B4
      Conserved Domains (1) summary
      smart00552
      Location:17 → 386
      ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)

    3. NM_001331305.1 → NP_001322030.1  denosine deaminases acting on tRNA [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W782, A0A1P8ASW1, A0A384L5T4, A0A7G2DMT5
      Conserved Domains (1) summary
      smart00552
      Location:17 → 431
      ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)

    4. NM_001331306.1 → NP_001322031.1  denosine deaminases acting on tRNA [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HU58, Q1PFZ4, Q9LQ80
      UniProtKB/TrEMBL
      A0A7G2DMT5
      Conserved Domains (1) summary
      smart00552
      Location:4 → 418
      ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HU58.1

    Gene LinkOut

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