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    HDA08 histone deacetylase 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837366, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HDA08
    Official Full Name
    histone deacetylase 8
    Primary source
    TAIR:AT1G08460
    Locus tag
    AT1G08460
    See related
    Araport:AT1G08460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHDA8; HDA8; histone deacetylase 8; HISTONE DEACETYLASE 8; T27G7.14; T27G7_14
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    Genomic context

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    See HDA08 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (2672198..2674721)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene aluminum activated malate transporter family protein Neighboring gene calreticulin 3 Neighboring gene Plant-specific transcription factor YABBY family protein Neighboring gene strictosidine synthase-like 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana. Zheng B, et al. PLoS Genet, 2014 Jul. PMID 25057814, Free PMC Article
    2. Subcellular localization of class II HDAs in Arabidopsis thaliana: nucleocytoplasmic shuttling of HDA15 is driven by light. Alinsug MV, et al. PLoS One, 2012. PMID 22363501, Free PMC Article
    3. Structure of Arabidopsis HISTONE DEACETYLASE15. Chen CY, et al. Plant Physiol, 2020 Nov. PMID 32878973, Free PMC Article
    4. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Pandey R, et al. Nucleic Acids Res, 2002 Dec 1. PMID 12466527, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100719.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables histone deacetylase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone deacetylase 8
    NP_563817.1
    • histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2672198..2674721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331774.1 → NP_001320319.1  histone deacetylase 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMF5

    2. NM_100719.4 → NP_563817.1  histone deacetylase 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563817.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q944J5, Q94EJ2, Q9SJE6
      UniProtKB/TrEMBL
      A0A178W305
      Conserved Domains (1) summary
      cd09996
      Location:6 → 351
      HDAC_classII_1; Histone deacetylases and histone-like deacetylases, classII
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94EJ2.1

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