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    PSF1 partner of SLD five 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844359, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSF1
    Official Full Name
    partner of SLD five 1
    Primary source
    TAIR:AT1G80190
    Locus tag
    AT1G80190
    See related
    Araport:AT1G80190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18B13.27; F18B13_27; partner of SLD five 1
    Summary
    Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.
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    Genomic context

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    See PSF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (30158923..30161829)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Mov34/MPN/PAD-1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice. Shultz RW, et al. Plant Physiol, 2007 Aug. PMID 17556508, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334965.1
    NM_001334966.1
    NM_106668.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA replication initiation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GINS complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of GINS complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    partner of SLD five 1
    NP_178136.1
    • partner of SLD five 1 (PSF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication initiation; LOCATED IN: GINS complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf1 (InterPro:IPR005339); Has 334 Blast hits to 334 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 142; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30158923..30161829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334962.1 → NP_001323118.1  partner of SLD five 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW89
      Conserved Domains (2) summary
      cd11710
      Location:9 → 90
      GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
      cd21696
      Location:102 → 150
      GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

    2. NM_001334963.1 → NP_001323117.1  partner of SLD five 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
      Conserved Domains (2) summary
      cd11710
      Location:3 → 139
      GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
      cd21696
      Location:151 → 199
      GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

    3. NM_001334964.1 → NP_001323120.1  partner of SLD five 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
      Conserved Domains (2) summary
      cd11710
      Location:3 → 139
      GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
      cd21696
      Location:151 → 199
      GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

    4. NM_106668.6 → NP_178136.1  partner of SLD five 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178136.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
      Conserved Domains (2) summary
      cd11710
      Location:3 → 139
      GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
      cd21696
      Location:151 → 199
      GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

    5. NM_001334965.1 → NP_001323116.1  partner of SLD five 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W280, A0A1P8AW53
      Conserved Domains (2) summary
      cd11710
      Location:3 → 139
      GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
      cd21696
      Location:151 → 193
      GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

    6. NM_001334966.1 → NP_001323119.1  partner of SLD five 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
      Conserved Domains (2) summary
      cd11710
      Location:3 → 139
      GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
      cd21696
      Location:151 → 199
      GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1
    Nucleotide Protein
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