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    splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842315, updated on 18-Sep-2024

    Summary

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    Official Full Name
    splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
    Primary source
    TAIR:AT1G60200
    Locus tag
    AT1G60200
    See related
    Araport:AT1G60200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13D8.9; T13D8_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (22200694..22205400, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ARM repeat superfamily protein Neighboring gene UB-like protease 1D Neighboring gene Radical SAM superfamily protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RBM25 Mediates Abiotic Responses in Plants. Cheng C, et al. Front Plant Sci, 2017. PMID 28344583, Free PMC Article
    2. An Arabidopsis PWI and RRM motif-containing protein is critical for pre-mRNA splicing and ABA responses. Zhan X, et al. Nat Commun, 2015 Sep 25. PMID 26404089, Free PMC Article
    3. A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a. Kanno T, et al. Genetics, 2017 Dec. PMID 28971960, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNA splicing is of particular importance for plant response to abscisic acid and that the splicing factor RBM25 has a critical role in this response.
      Title: An Arabidopsis PWI and RRM motif-containing protein is critical for pre-mRNA splicing and ABA responses.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001333889.1
    NM_104710.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA processing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
    NP_176226.3
    • splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); Has 135188 Blast hits to 78111 proteins in 2910 species: Archae - 381; Bacteria - 16050; Metazoa - 59921; Fungi - 15870; Plants - 11369; Viruses - 1556; Other Eukaryotes - 30041 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22200694..22205400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333887.1 → NP_001321661.1  splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WC39, A0A1P8ARN1

    2. NM_001333888.1 → NP_001321662.1  splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WC39, A0A1P8ARN1

    3. NM_104710.5 → NP_176226.3  splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176226.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFB3, O80743, O80744, Q8VY15
      UniProtKB/TrEMBL
      A0A5S9WR36, A0A654EJK6
      Conserved Domains (4) summary
      PTZ00341
      Location:277 → 447
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      smart00311
      Location:815 → 888
      PWI; domain in splicing factors
      cd12446
      Location:204 → 286
      RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
      pfam07271
      Location:87 → 201
      Cytadhesin_P30; Cytadhesin P30/P32

    4. NM_001333889.1 → NP_001321663.1  splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WC39, A0A1P8ARN1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY15.1

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