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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837924, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G13630
    Locus tag
    AT1G13630
    See related
    Araport:AT1G13630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21F23.6; F21F23_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (4669425..4673073, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene root meristem growth factor-like protein Neighboring gene DNA glycosylase superfamily protein Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001318994.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1).
    NP_172820.4
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3; Bacteria - 47; Metazoa - 773; Fungi - 914; Plants - 55536; Viruses - 0; Other Eukaryotes - 1597 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4669425..4673073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332076.1 → NP_001320809.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANZ4, A0A5S9UAD2, A0A654E9M4
      Conserved Domains (4) summary
      PLN03218
      Location:236 → 631
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:375 → 409
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:413 → 439
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:208 → 246
      PPR_2; PPR repeat family

    2. NM_001332075.1 → NP_001320806.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1X6, A0A1P8ANZ2

    3. NM_001332077.1 → NP_001320808.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANZ6, A0A5S9UAD2, A0A654E9M4

    4. NM_001332078.1 → NP_001320807.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1X6, A0A1P8ANY2

    5. NM_101233.4 → NP_172820.4  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172820.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9UAD2, A0A654E9M4
      Conserved Domains (7) summary
      TIGR00756
      Location:366 → 397
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:366 → 392
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:691 → 721
      PPR; PPR repeat
      pfam12854
      Location:392 → 424
      PPR_1; PPR repeat
      pfam13041
      Location:362 → 410
      PPR_2; PPR repeat family
      pfam13812
      Location:538 → 571
      PPR_3; Pentatricopeptide repeat domain
      cl03252
      Location:286 → 318
      PPR; PPR repeat

    6. NM_001332074.1 → NP_001318994.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HSJ0, F4HSJ1, Q9FZ67, Q9LMY5
      UniProtKB/TrEMBL
      A0A5S9UAD2, A0A654E9M4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LMY5.3

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