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    K11D2.4 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187291, updated on 9-Dec-2024

    Summary

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    Official Symbol
    K11D2.4
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00010770
    Locus tag
    CELE_K11D2.4
    See related
    AllianceGenome:WB:WBGene00010770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF707 (zinc finger protein 707) and ZNF746 (zinc finger protein 746). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See K11D2.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    9
    Sequence:
    Chromosome: I; NC_003279.8 (12518787..12528322)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene AP-1 complex subunit mu-1-I;MHD domain-containing protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene ncRNA Neighboring gene DNA primase large subunit Neighboring gene Protein YIPF Neighboring gene HMG box domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C2H2-type domain-containing protein
    NP_001040677.2
    • Confirmed by transcript evidence
    NP_001040678.1
    • Confirmed by transcript evidence
    NP_001251918.1
    • Partially confirmed by transcript evidence
    NP_001251919.1
    • Confirmed by transcript evidence
    NP_001251921.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      12518787..12528322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047212.3 → NP_001040677.2  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040677.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDL1
      Conserved Domains (2) summary
      sd00017
      Location:249 → 269
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:289 → 314
      zf-H2C2_2; Zinc-finger double domain

    2. NM_001264989.3 → NP_001251918.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251918.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EBU1
      Conserved Domains (2) summary
      sd00017
      Location:237 → 257
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:277 → 302
      zf-H2C2_2; Zinc-finger double domain

    3. NM_001264990.3 → NP_001251919.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251919.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EFR5
      Conserved Domains (2) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:215 → 240
      zf-H2C2_2; Zinc-finger double domain

    4. NM_001047213.3 → NP_001040678.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040678.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EGD1
      Conserved Domains (2) summary
      sd00017
      Location:109 → 129
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:149 → 174
      zf-H2C2_2; Zinc-finger double domain

    5. NM_001264992.3 → NP_001251921.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251921.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5ECP1
      Conserved Domains (2) summary
      sd00017
      Location:31 → 51
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:71 → 96
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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