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    Y5F2A.4 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178004, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y5F2A.4
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00012385
    Locus tag
    CELE_Y5F2A.4
    See related
    AllianceGenome:WB:WBGene00012385
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Is expressed in nerve ring and tail neurons. Orthologous to human ZNF28 (zinc finger protein 28). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y5F2A.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (11076085..11078582, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Transthyretin-like family protein Neighboring gene pseudo Neighboring gene Ubiquitin-like modifier-activating enzyme ATG7 Neighboring gene Ubiquitin-conjugating enzyme E2 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C2H2-type domain-containing protein
    NP_502063.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      11076085..11078582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069662.5 → NP_502063.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502063.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWL0
      Conserved Domains (2) summary
      sd00017
      Location:6 → 27
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:44 → 65
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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