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    • Showing Current items.

    clec-56 C-type LECtin [ Caenorhabditis elegans ]

    Gene ID: 179953, updated on 28-Oct-2024

    Summary

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    Official Symbol
    clec-56
    Official Full Name
    C-type LECtin
    Primary source
    WormBase:WBGene00008595
    Locus tag
    CELE_F08H9.7
    See related
    AllianceGenome:WB:WBGene00008595
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See clec-56 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (14474399..14476794)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C-type LECtin Neighboring gene ncRNA Neighboring gene C-type LECtin Neighboring gene CUB domain-containing protein Neighboring gene C-type LECtin Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Early-life exposure to mycotoxin zearalenone exacerbates aberrant immune response, oxidative stress, and mortality of Caenorhabditis elegans under pathogen Bacillus thuringiensis infection. How CM, et al. Ecotoxicol Environ Saf, 2024 Mar 1. PMID 38342010
    2. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    C-type LECtin
    NP_506589.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      14474399..14476794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074188.6 → NP_506589.2  C-type LECtin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506589.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19230
      Conserved Domains (3) summary
      smart00034
      Location:25 → 147
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00042
      Location:167 → 269
      CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
      cd00041
      Location:281 → 385
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    Nucleotide Protein
    Heading Accession and Version

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