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    • Showing Current items.

    math-38 MATH domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 188249, updated on 9-Dec-2024

    Summary

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    Official Symbol
    math-38
    Official Full Name
    MATH domain-containing protein
    Primary source
    WormBase:WBGene00020326
    Locus tag
    CELE_T07H3.3
    See related
    AllianceGenome:WB:WBGene00020326
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in defense response to Gram-positive bacterium. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See math-38 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (1577378..1579986, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene MATH domain-containing protein Neighboring gene pseudo Neighboring gene C-type LECtin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The AMPylase FIC-1 modulates TGF-β signaling in Caenorhabditis elegans. Hernandez-Lima MA, et al. Front Mol Neurosci, 2022. PMID 36504677, Free PMC Article
    2. Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. Visvikis O, et al. Immunity, 2014 Jun 19. PMID 24882217, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in defense response to Gram-positive bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MATH domain-containing protein
    NP_494001.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      1577378..1579986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061600.5 → NP_494001.3  MATH domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494001.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      D6VPA0
      Conserved Domains (1) summary
      smart00061
      Location:5 → 91
      MATH; meprin and TRAF homology
    Nucleotide Protein
    Heading Accession and Version

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