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    F54B8.4 Small, acid-soluble spore protein gamma-type [ Caenorhabditis elegans ]

    Gene ID: 186201, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F54B8.4
    Official Full Name
    Small, acid-soluble spore protein gamma-type
    Primary source
    WormBase:WBGene00010019
    Locus tag
    CELE_F54B8.4
    See related
    AllianceGenome:WB:WBGene00010019
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ribosome binding activity. Involved in innate immune response. Orthologous to human DAP (death associated protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F54B8.4 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (15816382..15817150)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene NR LBD domain-containing protein Neighboring gene F-box domain-containing protein Neighboring gene AntiBacterial Factor related Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ribosome binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in apoptotic signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cellular response to amino acid starvation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in innate immune response HEP PubMed 
    involved_in negative regulation of autophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosome hibernation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Small, acid-soluble spore protein gamma-type
    NP_001256684.1
    • Confirmed by transcript evidence
    NP_001256685.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      15816382..15817150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269755.3 → NP_001256684.1  Small, acid-soluble spore protein gamma-type [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256684.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H9G342
      Conserved Domains (1) summary
      pfam15228
      Location:19 → 82
      DAP; Death-associated protein

    2. NM_001269756.3 → NP_001256685.1  Small, acid-soluble spore protein gamma-type [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256685.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45562
      Conserved Domains (1) summary
      pfam15228
      Location:11 → 74
      DAP; Death-associated protein
    Nucleotide Protein
    Heading Accession and Version

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