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    elli-1 Enlarged germline granules protein 1 [ Caenorhabditis elegans ]

    Gene ID: 184716, updated on 9-Dec-2024

    Summary

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    Official Symbol
    elli-1
    Official Full Name
    Enlarged germline granules protein 1
    Primary source
    WormBase:WBGene00008968
    Locus tag
    CELE_F20C5.3
    See related
    AllianceGenome:WB:WBGene00008968
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in P granule assembly and embryo development. Located in cytoplasm. Is expressed in germ line. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See elli-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (8752699..8754827, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Poly(ADP-ribose) glycohydrolase 1;poly(ADP-ribose) glycohydrolase Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene Kinesin-like protein Neighboring gene ncRNA Neighboring gene Cell cycle control protein 50A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. Andralojc KM, et al. PLoS Genet, 2017 Feb. PMID 28182654, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Targeting F20C5.3 with RNAi causes bright, enlarged P granules, and F20C5.3 has now been renamed elli-1 (enlarged germline granules).
      Title: ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in P granule assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in embryo development ending in birth or egg hatching IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Enlarged germline granules protein 1
    NP_001255325.1
    • Confirmed by transcript evidence
    NP_001255326.1
    • Confirmed by transcript evidence
    NP_001255327.1
    • Confirmed by transcript evidence
    NP_001255328.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8752699..8754827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268396.2 → NP_001255325.1  Enlarged germline granules protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255325.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19634

    2. NM_001268397.3 → NP_001255326.1  Enlarged germline granules protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255326.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3YT16, D3YT17, D3YT18, Q19634

    3. NM_001268398.3 → NP_001255327.1  Enlarged germline granules protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255327.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3YT17

    4. NM_001268399.3 → NP_001255328.1  Enlarged germline granules protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255328.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3YT18
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3YT16.2

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