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    Y54H5A.2 Protein HGH1 homolog [ Caenorhabditis elegans ]

    Gene ID: 175699, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y54H5A.2
    Official Full Name
    Protein HGH1 homolog
    Primary source
    WormBase:WBGene00021900
    Locus tag
    CELE_Y54H5A.2
    See related
    AllianceGenome:WB:WBGene00021900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human HGH1 (HGH1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y54H5A.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (5137358..5149578, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene MOR2-PAG1_N domain-containing protein;Protein furry C-terminal domain-containing protein Neighboring gene T-box protein 2 Neighboring gene ncRNA Neighboring gene RNA-binding protein 42 Neighboring gene Glutamate-rich WD repeat-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Protein HGH1 homolog
    NP_498089.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5137358..5149578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065688.7 → NP_498089.2  Protein HGH1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498089.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BL64
      Conserved Domains (2) summary
      pfam04063
      Location:101 → 282
      DUF383; Domain of unknown function (DUF383)
      pfam04064
      Location:287 → 351
      DUF384; Domain of unknown function (DUF384)
    Nucleotide Protein
    Heading Accession and Version

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