U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LBX1-AS1 LBX1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 399806, updated on 10-Dec-2024

    Summary

    Official Symbol
    LBX1-AS1provided by HGNC
    Official Full Name
    LBX1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:48678
    See related
    Ensembl:ENSG00000227128 AllianceGenome:HGNC:48678
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MUSE
    Expression
    Restricted expression toward testis (RPKM 1.8) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LBX1-AS1 in Genome Data Viewer
    Location:
    10q24.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (101229594..101238859)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (102112949..102122207)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (102989351..102998616)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102982447-102983096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102985871-102986372 Neighboring gene ladybird homeobox 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102995795-102996717 Neighboring gene long intergenic non-protein coding RNA 2681 Neighboring gene MPRA-validated peak1078 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:103020107-103020894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:103026397-103026935 Neighboring gene uncharacterized LOC124902597

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • LBX1 antisense RNA 1 (head to head)

    Clone Names

    • FLJ39379, FLJ41350

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029380.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA431734, AK096698, AK123344, AK294034
      Related
      ENST00000823574.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      101229594..101238859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      102112949..102122207
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)