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    Ccdc43 coiled-coil domain containing 43 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360637, updated on 27-Nov-2024

    Summary

    Official Symbol
    Ccdc43provided by RGD
    Official Full Name
    coiled-coil domain containing 43provided by RGD
    Primary source
    RGD:1311929
    See related
    EnsemblRapid:ENSRNOG00000002748 AllianceGenome:RGD:1311929
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311929
    Summary
    Predicted to be located in cytosol. Orthologous to human CCDC43 (coiled-coil domain containing 43). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 178.7), Heart (RPKM 101.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc43 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (88150672..88162863, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (87650554..87662788, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (90644993..90658241, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V0 subunit C, pseudogene 1 Neighboring gene meiosis specific with coiled-coil domain Neighboring gene uncharacterized LOC120095185 Neighboring gene uncharacterized LOC103693436 Neighboring gene DBF4B-CDC7 kinase regulatory subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 43

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100728.1NP_001094198.1  coiled-coil domain-containing protein 43

      See identical proteins and their annotated locations for NP_001094198.1

      Status: VALIDATED

      Source sequence(s)
      BC091255, CB792766
      UniProtKB/Swiss-Prot
      Q5BK07
      Related
      ENSRNOP00000003685.7, ENSRNOT00000003685.9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      88150672..88162863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)