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    Cdkn2aipnl CDKN2A interacting protein N-terminal like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287278, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cdkn2aipnlprovided by RGD
    Official Full Name
    CDKN2A interacting protein N-terminal likeprovided by RGD
    Primary source
    RGD:1308696
    See related
    EnsemblRapid:ENSRNOG00000005024 AllianceGenome:RGD:1308696
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308696
    Summary
    Orthologous to human CDKN2AIPNL (CDKN2A interacting protein N-terminal like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 181.2), Adrenal (RPKM 171.9) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cdkn2aipnl in Genome Data Viewer
    Location:
    10q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (36731983..36741500)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (36231134..36240569)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (37422647..37432082)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA70 Neighboring gene ubiquitin-conjugating enzyme E2B Neighboring gene cyclin-dependent kinase-like 3 Neighboring gene large ribosomal subunit protein eL21-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    CDKN2AIP N-terminal-like protein
    Names
    CDKN2A-interacting protein N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008278.2NP_001008279.1  CDKN2AIP N-terminal-like protein

      See identical proteins and their annotated locations for NP_001008279.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/Swiss-Prot
      Q5RK03
      UniProtKB/TrEMBL
      A6HE80
      Related
      ENSRNOP00000006708.4, ENSRNOT00000006708.6
      Conserved Domains (1) summary
      pfam11952
      Location:25113
      XTBD; XRN-Two Binding Domain, XTBD

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      36731983..36741500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268586.1XP_063124656.1  CDKN2AIP N-terminal-like protein isoform X1