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    Snn stannin [ Rattus norvegicus (Norway rat) ]

    Gene ID: 29140, updated on 3-Dec-2024

    Summary

    Official Symbol
    Snnprovided by RGD
    Official Full Name
    stanninprovided by RGD
    Primary source
    RGD:3730
    See related
    EnsemblRapid:ENSRNOG00000058739 AllianceGenome:RGD:3730
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Predicted to be active in membrane. Orthologous to human SNN (stannin). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 1098.5), Brain (RPKM 562.3) and 7 other tissues See more
    Orthologs
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    Genomic context

    See Snn in Genome Data Viewer
    Location:
    10q11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (5079885..5088565, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (4572933..4581606, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (4635897..4644570, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ribosomal L1 domain containing 1 Neighboring gene zinc finger CCCH type containing 7 A Neighboring gene uncharacterized LOC134480745 Neighboring gene thioredoxin domain containing 11 Neighboring gene BCL2 like 12, pseudogene 2 Neighboring gene mRNA turnover 4, ribosome maturation factor, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034083.1NP_001029255.1  stannin

      See identical proteins and their annotated locations for NP_001029255.1

      Status: PROVISIONAL

      Source sequence(s)
      BC100111
      UniProtKB/Swiss-Prot
      P61808, Q498Q9
      UniProtKB/TrEMBL
      A0A8I5XW66, A6K4I1
      Related
      ENSRNOP00000074283.1, ENSRNOT00000088279.3
      Conserved Domains (1) summary
      cd20257
      Location:488
      Stannin

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      5079885..5088565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268793.1XP_063124863.1  stannin isoform X1

    2. XM_063268794.1XP_063124864.1  stannin isoform X2

      UniProtKB/Swiss-Prot
      P61808, Q498Q9
      UniProtKB/TrEMBL
      A0A8I5XW66, A6K4I1