U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HMG-box (high mobility group) DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818008, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    HMG-box (high mobility group) DNA-binding family protein
    Primary source
    TAIR:AT2G34450
    Locus tag
    AT2G34450
    See related
    Araport:AT2G34450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13P17.25
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (14526619..14529601, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene O-acetyltransferase family protein Neighboring gene ncRNA Neighboring gene photosystem II light harvesting complex protein B1B2 Neighboring gene light-harvesting chlorophyll-protein complex II subunit B1 Neighboring gene AGAMOUS-like 29 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene urease accessory protein G Neighboring gene Ribosomal protein L18ae/LX family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins. Grasser M, et al. J Mol Biol, 2006 May 5. PMID 16563436
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At2g34450 protein is a nuclear protein, whereas the At5g23405 protein is found mainly in the cytoplasm
      Title: The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001036403.1
    NM_001336514.1
    NM_001336515.1
    NM_128997.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    HMG-box (high mobility group) DNA-binding family protein
    NP_001031480.1
    • HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001318353.1
    • HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.1); Has 3501 Blast hits to 2767 proteins in 283 species: Archae - 0; Bacteria - 0; Metazoa - 2368; Fungi - 291; Plants - 519; Viruses - 3; Other Eukaryotes - 320 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14526619..14529601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336514.1 → NP_001318353.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64702, Q2V430
      UniProtKB/TrEMBL
      A0A178VQH6, A0A5S9X3W4, A0A654F9F6
      Conserved Domains (1) summary
      cd01390
      Location:63 → 128
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    2. NM_001336515.1 → NP_001324951.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64702, Q2V430
      UniProtKB/TrEMBL
      A0A178VQH6, A0A5S9X3W4, A0A654F9F6
      Conserved Domains (1) summary
      cd01390
      Location:63 → 128
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    3. NM_128997.3 → NP_565788.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565788.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64702, Q2V430
      UniProtKB/TrEMBL
      A0A178VQH6, A0A5S9X3W4, A0A654F9F6
      Conserved Domains (1) summary
      cd01390
      Location:63 → 128
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    4. NM_001036403.1 → NP_001031480.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031480.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQH6
      Conserved Domains (1) summary
      cd01390
      Location:63 → 129
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64702.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools