ASG3 SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ASG3
Official Full Name: SNF2 domain-containing protein / helicase domain-containing protein
Primary source: TAIR:AT2G44980
Locus tag: AT2G44980
See related: Araport:AT2G44980
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ALTERED SEED GERMINATION 3; CHR10; chromatin remodeling 10; T14P1.22
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Genomic context

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See ASG3 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 17

Sequence:: Chromosome: 2; NC_003071.7 (18552173..18556674, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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NM_130063.2

Supported by ESTs:

NM_201960.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP-dependent chromatin remodeler activity	IEA Inferred from Electronic Annotation more info
enables DNA helicase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in DNA repair	IEA Inferred from Electronic Annotation more info
involved_in chromatin remodeling	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SNF2 domain-containing protein / helicase domain-containing protein

NP_182025.2

SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_973689.2

SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

18552173..18556674 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001337110.1 → NP_001323711.1 SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AXX5, A0A5S9X734
NM_201960.3 → NP_973689.2 SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973689.2

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IV45

UniProtKB/TrEMBL

A0A5S9X734, A0A654F3D3

Conserved Domains (2) summary

PLN03142
Location:38 → 584

PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

cd03331
Location:705 → 864

Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
NM_130063.2 → NP_182025.2 SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_182025.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9X734, F4IV46

Conserved Domains (5) summary

cd00046
Location:71 → 215

DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

cd03331
Location:686 → 845

Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...

pfam00176
Location:54 → 349

SNF2_N; SNF2 family N-terminal domain

pfam00271
Location:367 → 482

Helicase_C; Helicase conserved C-terminal domain

pfam03763
Location:605 → 671

Remorin_C; Remorin, C-terminal region