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    late embryogenesis abundant domain-containing protein / LEA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814901, updated on 18-Sep-2024

    Summary

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    Official Full Name
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    Primary source
    TAIR:AT2G03740
    Locus tag
    AT2G03740
    See related
    Araport:AT2G03740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19B11.19; F19B11_19
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (1142725..1143988, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ACT domain repeat 5 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene sulfotransferase 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes. Bremer A, et al. FEBS J, 2017 Mar. PMID 28109185
    2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126421.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cold acclimation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    NP_178469.1
    • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT2G03850.1); Has 1140 Blast hits to 576 proteins in 184 species: Archae - 2; Bacteria - 341; Metazoa - 46; Fungi - 35; Plants - 656; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1142725..1143988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126421.2 → NP_178469.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178469.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VW41, Q9ZPQ7
      Conserved Domains (1) summary
      cl02879
      Location:1 → 66
      Chloroa_b-bind; Chlorophyll A-B binding protein
    Nucleotide Protein
    Heading Accession and Version

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