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    TKI1 TSL-kinase interacting protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818270, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TKI1
    Official Full Name
    TSL-kinase interacting protein 1
    Primary source
    TAIR:AT2G36960
    Locus tag
    AT2G36960
    See related
    Araport:AT2G36960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1J8.14; T1J8_14; TSL-kinase interacting protein 1
    Summary
    Arabidopsis thaliana myb/SANT domain protein
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    Genomic context

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    See TKI1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (15522769..15527758)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TOUSLED kinase activity oscillates during the cell cycle and interacts with chromatin regulators. Ehsan H, et al. Plant Physiol, 2004 Apr. PMID 15047893, Free PMC Article
    2. PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. Bowen AJ, et al. J Mol Biol, 2010 Feb 5. PMID 19962994
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001202764.1
    NM_001336615.1
    NM_179942.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TSL-kinase interacting protein 1
    NP_001189693.1
    • TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1).
    NP_001318368.1
    • TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1); Has 170 Blast hits to 166 proteins in 60 species: Archae - 0; Bacteria - 20; Metazoa - 46; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    NP_850273.1
    • TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1); Has 171 Blast hits to 167 proteins in 60 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 2; Plants - 87; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15522769..15527758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179942.4 → NP_850273.1  TSL-kinase interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850273.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBL6, Q8LJT8, Q8VZJ8, Q9SJL1
      UniProtKB/TrEMBL
      A0A178VNH2, A0A5S9X4T3, A0A654EZJ2
      Conserved Domains (2) summary
      smart00717
      Location:57 → 102
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:57 → 100
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. NM_001202764.1 → NP_001189693.1  TSL-kinase interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189693.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNH2, A0A5S9X4T3, A0A654EZJ2, F4IP39
      Conserved Domains (2) summary
      smart00717
      Location:57 → 102
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:57 → 100
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. NM_001336615.1 → NP_001318368.1  TSL-kinase interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBL6, Q8LJT8, Q8VZJ8, Q9SJL1
      UniProtKB/TrEMBL
      A0A178VNH2, A0A5S9X4T3, A0A654EZJ2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LJT8.2

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