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    golgi apparatus membrane protein-like protein ECHIDNA protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837454, updated on 18-Sep-2024

    Summary

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    Official Full Name
    golgi apparatus membrane protein-like protein ECHIDNA protein
    Primary source
    TAIR:AT1G09330
    Locus tag
    AT1G09330
    See related
    Araport:AT1G09330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ECH; ECHIDNA; T31J12.5; T31J12_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (3012739..3015255, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Metallopeptidase M24 family protein Neighboring gene plant/protein (Protein of unknown function, DUF538) Neighboring gene agenet domain-containing protein Neighboring gene chloroplast RNA binding protein Neighboring gene galactinol synthase 3 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ECHIDNA protein is involved in seed coloration, protein trafficking to vacuoles, and vacuolar biogenesis. Ichino T, et al. J Exp Bot, 2020 Jul 6. PMID 32201898, Free PMC Article
    2. ECHIDNA protein impacts on male fertility in Arabidopsis by mediating trans-Golgi network secretory trafficking during anther and pollen development. Fan X, et al. Plant Physiol, 2014 Mar. PMID 24424320, Free PMC Article
    3. ECHIDNA-mediated post-Golgi trafficking of auxin carriers for differential cell elongation. Boutté Y, et al. Proc Natl Acad Sci U S A, 2013 Oct 1. PMID 24043780, Free PMC Article
    4. Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis. Gendre D, et al. Plant Cell, 2013 Jul. PMID 23832588, Free PMC Article
    5. Conserved Arabidopsis ECHIDNA protein mediates trans-Golgi-network trafficking and cell elongation. Gendre D, et al. Proc Natl Acad Sci U S A, 2011 May 10. PMID 21512130, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ECH expression is critical for a variety of aspects of male reproduction, including the production of functional pollen grains, their effective release, germination, and tube formation.
      Title: ECHIDNA protein impacts on male fertility in Arabidopsis by mediating trans-Golgi network secretory trafficking during anther and pollen development.
    2. ECH protein is required for the trans-Golgi network-mediated trafficking of the auxin influx carrier AUX1 to the plasma membrane. [ECH]
      Title: ECHIDNA-mediated post-Golgi trafficking of auxin carriers for differential cell elongation.
    3. Data indicate that YIP4a (AT2G18840)/YIP4b (At4g30260)/ECH (ECHIDNA; At1g09330) complex is required for cell wall polysaccharide secretion.
      Title: Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001331829.1
    NM_100803.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant organ development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein secretion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vacuolar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in endosome HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in trans-Golgi network HDA PubMed 
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in trans-Golgi network membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    golgi apparatus membrane protein-like protein ECHIDNA protein
    NP_563842.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3012739..3015255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100803.4 → NP_563842.1  golgi apparatus membrane protein-like protein ECHIDNA protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563842.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WGW7, Q0WRM9, Q8LEK2, Q9ZPZ2
      UniProtKB/TrEMBL
      A0A384LL91
      Conserved Domains (1) summary
      pfam05832
      Location:15 → 155
      DUF846; Eukaryotic protein of unknown function (DUF846)

    2. NM_001331829.1 → NP_001320663.1  golgi apparatus membrane protein-like protein ECHIDNA protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANI1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LEK2.1

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