U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844292, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT1G79540
    Locus tag
    AT1G79540
    See related
    Araport:AT1G79540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8K14.4; T8K14_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (29919975..29923124, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cation efflux family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Neighboring gene ncRNA Neighboring gene phosphoglycerate kinase Neighboring gene FTSH protease 12 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_106602.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_178072.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 52662 Blast hits to 14102 proteins in 281 species: Archae - 4; Bacteria - 51; Metazoa - 515; Fungi - 799; Plants - 49672; Viruses - 0; Other Eukaryotes - 1621 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29919975..29923124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106602.3 → NP_178072.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178072.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SAJ5
      UniProtKB/TrEMBL
      A0A178W901, A0A654EQF9
      Conserved Domains (3) summary
      PLN03218
      Location:181 → 559
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:200 → 227
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:115 → 171
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SAJ5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools