SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: SGNH hydrolase-type esterase superfamily protein
Primary source: TAIR:AT1G28570
Locus tag: AT1G28570
See related: Araport:AT1G28570
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F1K23.19; F1K23_19
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (10041576..10044258, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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General gene information

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Homology

Orthologs from OrthoDB

NM_001332820.1

Supported by ESTs:

NM_102625.4

Supported by ESTs:

NM_202201.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables hydrolase activity, acting on ester bonds	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SGNH hydrolase-type esterase superfamily protein

NP_174179.3

SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28580.1); Has 3513 Blast hits to 3464 proteins in 231 species: Archae - 0; Bacteria - 358; Metazoa - 0; Fungi - 4; Plants - 3140; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NP_973930.1

SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

10041576..10044258 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_102625.4 → NP_174179.3 SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_174179.3

Status: REVIEWED

UniProtKB/Swiss-Prot

Q3ED52, Q9FXJ1

UniProtKB/TrEMBL

A0A178WJN1, A0A5S9WAF0, A0A654EDJ4

Conserved Domains (1) summary

cd01837
Location:34 → 364

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
NM_202201.1 → NP_973930.1 SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973930.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WJN1

Conserved Domains (1) summary

cd01837
Location:34 → 292

SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...
NM_001332820.1 → NP_001323314.1 SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WJL2, A0A1P8AWP0