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    symplekin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839651, updated on 18-Sep-2024

    Summary

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    Official Full Name
    symplekin
    Primary source
    TAIR:AT1G27595
    Locus tag
    AT1G27595
    See related
    Araport:AT1G27595
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22C5.3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    27
    Sequence:
    Chromosome: 1; NC_003070.9 (9592088..9602917)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 3- and 4-kinase family protein Neighboring gene ncRNA Neighboring gene F-box protein (DUF295) Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TANG1, Encoding a Symplekin_C Domain-Contained Protein, Influences Sugar Responses in Arabidopsis. Zheng L, et al. Plant Physiol, 2015 Jul. PMID 26002908, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TANG1, a unique gene, plays an important role in sugar responses in Arabidopsis.[TANG1]
      Title: TANG1, Encoding a Symplekin_C Domain-Contained Protein, Influences Sugar Responses in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    NM_001332770.1
    NM_102523.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to glucose stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    symplekin
    NP_001319093.1
    • CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9592088..9602917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332770.1 → NP_001319093.1  symplekin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9W5L4, A0A654EEW7, F4HSZ1
      Conserved Domains (2) summary
      pfam11935
      Location:100 → 314
      DUF3453; Domain of unknown function (DUF3453)
      pfam12295
      Location:1091 → 1270
      Symplekin_C; Symplekin tight junction protein C terminal

    2. NM_102523.3 → NP_174079.2  symplekin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174079.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL07, Q6NPW5
      Conserved Domains (1) summary
      pfam11935
      Location:99 → 243
      DUF3453; Domain of unknown function (DUF3453)
    Nucleotide Protein
    Heading Accession and Version

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