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    Endomembrane protein 70 protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837355, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Endomembrane protein 70 protein family
    Primary source
    TAIR:AT1G08350
    Locus tag
    AT1G08350
    See related
    Araport:AT1G08350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27G7.5; T27G7_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (2632810..2635866, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor family protein Neighboring gene ncRNA Neighboring gene Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene decapping 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana genes expressed in the early compatible interaction with root-knot nematodes. Vercauteren I, et al. Mol Plant Microbe Interact, 2001 Mar. PMID 11277426
    2. Functional characterization of the KNOLLE-interacting t-SNARE AtSNAP33 and its role in plant cytokinesis. Heese M, et al. J Cell Biol, 2001 Oct 15. PMID 11591731, Free PMC Article
    3. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084020.1
    NM_001331771.1
    NM_001331772.1
    NM_100708.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within membrane fusion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to nematode IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in phragmoplast TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Endomembrane protein 70 protein family
    NP_001077489.1
    • Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1602 Blast hits to 1535 proteins in 321 species: Archae - 0; Bacteria - 3; Metazoa - 611; Fungi - 269; Plants - 455; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).
    NP_563812.1
    • Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0; Bacteria - 3; Metazoa - 602; Fungi - 224; Plants - 440; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2632810..2635866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084020.1 → NP_001077489.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077489.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HW17, F4HW18, Q94AV9, Q9SCX1, Q9SJF5
      UniProtKB/TrEMBL
      A0A178WGW9, A0A5S9TB87
      Conserved Domains (1) summary
      pfam02990
      Location:52 → 546
      EMP70; Endomembrane protein 70

    2. NM_100708.2 → NP_563812.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563812.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TB87
      Conserved Domains (1) summary
      pfam02990
      Location:1 → 465
      EMP70; Endomembrane protein 70

    3. NM_001331771.1 → NP_001323141.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HW17, F4HW18, Q94AV9, Q9SCX1, Q9SJF5
      UniProtKB/TrEMBL
      A0A178WGW9, A0A5S9TB87
      Conserved Domains (1) summary
      pfam02990
      Location:52 → 546
      EMP70; Endomembrane protein 70

    4. NM_001331772.1 → NP_001323140.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW75, A0A5S9TB87
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HW17.1

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