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    AMP-dependent synthetase and ligase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838754, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AMP-dependent synthetase and ligase family protein
    Primary source
    TAIR:AT1G21530
    Locus tag
    AT1G21530
    See related
    Araport:AT1G21530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J8.13; F24J8_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (7545149..7546988, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene Calcium-binding EF-hand family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001084104.2
    NM_102002.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AMP-dependent synthetase and ligase family protein
    NP_001077573.1
    • AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77153 Blast hits to 70454 proteins in 3601 species: Archae - 1159; Bacteria - 50507; Metazoa - 3344; Fungi - 3637; Plants - 2272; Viruses - 1; Other Eukaryotes - 16233 (source: NCBI BLink).
    NP_173572.2
    • AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77218 Blast hits to 70321 proteins in 3603 species: Archae - 1163; Bacteria - 50491; Metazoa - 3382; Fungi - 3676; Plants - 2327; Viruses - 1; Other Eukaryotes - 16178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7545149..7546988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084104.2 → NP_001077573.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077573.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0ME81, Q8LRT3, Q9LPK7
      UniProtKB/TrEMBL
      A0A5S9VFZ2, A0A654EC02
      Conserved Domains (2) summary
      cd12118
      Location:12 → 543
      ttLC_FACS_AEE21_like; Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis
      PRK08162
      Location:4 → 549
      PRK08162; acyl-CoA synthetase; Validated

    2. NM_102002.2 → NP_173572.2  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173572.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VFZ2, A0A654EC02
      Conserved Domains (2) summary
      cd12118
      Location:12 → 541
      ttLC_FACS_AEE21_like; Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis
      PRK08162
      Location:4 → 547
      PRK08162; acyl-CoA synthetase; Validated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPK7.1

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