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    PPR596 PENTATRICOPEPTIDE REPEAT 596 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844367, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPR596
    Official Full Name
    PENTATRICOPEPTIDE REPEAT 596
    Primary source
    TAIR:AT1G80270
    Locus tag
    AT1G80270
    See related
    Araport:AT1G80270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5I6.2; F5I6_2; PENTATRICOPEPTIDE REPEAT 596
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    Genomic context

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    See PPR596 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (30180907..30183561)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene nucleotide transporter 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PPR596 Is Required for nad2 Intron Splicing and Complex I Biogenesis in Arabidopsis. Sayyed A, et al. Int J Mol Sci, 2024 Mar 21. PMID 38542518, Free PMC Article
    2. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PPR596 Is Required for nad2 Intron Splicing and Complex I Biogenesis in Arabidopsis.
      Title: PPR596 Is Required for nad2 Intron Splicing and Complex I Biogenesis in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084384.3
    NM_001334976.1
    NM_001334977.1
    NM_106676.2
    NM_202461.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    PENTATRICOPEPTIDE REPEAT 596
    NP_001077853.1
    • PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
    NP_178143.1
    • PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
    NP_974190.1
    • PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30180907..30183561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202461.3 → NP_974190.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974190.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56YX6, Q9C977
      UniProtKB/TrEMBL
      A0A178W3Z6, A0A5S9WW29
      Conserved Domains (3) summary
      TIGR00756
      Location:437 → 468
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:407 → 429
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:250 → 309
      PPR_3; Pentatricopeptide repeat domain

    2. NM_001084384.3 → NP_001077853.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077853.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56YX6, Q9C977
      UniProtKB/TrEMBL
      A0A178W3Z6, A0A5S9WW29
      Conserved Domains (3) summary
      TIGR00756
      Location:437 → 468
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:407 → 429
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:250 → 309
      PPR_3; Pentatricopeptide repeat domain

    3. NM_001334976.1 → NP_001321807.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56YX6, Q9C977
      UniProtKB/TrEMBL
      A0A178W3Z6, A0A5S9WW29
      Conserved Domains (3) summary
      TIGR00756
      Location:437 → 468
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:407 → 429
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:250 → 309
      PPR_3; Pentatricopeptide repeat domain

    4. NM_106676.2 → NP_178143.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178143.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56YX6, Q9C977
      UniProtKB/TrEMBL
      A0A178W3Z6, A0A5S9WW29
      Conserved Domains (3) summary
      TIGR00756
      Location:437 → 468
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:407 → 429
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:250 → 309
      PPR_3; Pentatricopeptide repeat domain

    5. NM_001334977.1 → NP_001321806.1  PENTATRICOPEPTIDE REPEAT 596 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56YX6, Q9C977
      UniProtKB/TrEMBL
      A0A178W3Z6, A0A5S9WW29
      Conserved Domains (3) summary
      TIGR00756
      Location:437 → 468
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:407 → 429
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:250 → 309
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C977.1

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