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    ABCB26 transporter associated with antigen processing protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843398, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCB26
    Official Full Name
    transporter associated with antigen processing protein 1
    Primary source
    TAIR:AT1G70610
    Locus tag
    AT1G70610
    See related
    Araport:AT1G70610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATP-binding cassette B26; ATTAP1; F5A18.21; F5A18_21; TAP1; transporter associated with antigen processing protein 1
    Summary
    member of TAP subfamily
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    Genomic context

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    See ABCB26 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Sequence:
    Chromosome: 1; NC_003070.9 (26621899..26626508)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene Ribosomal protein L18e/L15 superfamily protein Neighboring gene cyclin-like protein Neighboring gene Nucleotide-diphospho-sugar transferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334463.1
    NM_105729.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    transporter associated with antigen processing protein 1
    NP_177218.3
    • transporter associated with antigen processing protein 1 (TAP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 433965 Blast hits to 389325 proteins in 4163 species: Archae - 7467; Bacteria - 334124; Metazoa - 10295; Fungi - 7727; Plants - 5683; Viruses - 22; Other Eukaryotes - 68647 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26621899..26626508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105729.6 → NP_177218.3  transporter associated with antigen processing protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177218.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY46, Q9CAB3, Q9CAL0
      UniProtKB/TrEMBL
      A0A178W3D9, A0A5S9WTQ2
      Conserved Domains (1) summary
      TIGR00958
      Location:76 → 691
      3a01208; Conjugate Transporter-2 (CT2) Family protein

    2. NM_001334463.1 → NP_001321943.1  transporter associated with antigen processing protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASG0
      Conserved Domains (1) summary
      TIGR00958
      Location:13 → 510
      3a01208; Conjugate Transporter-2 (CT2) Family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RY46.1

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