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    JR1 Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820895, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JR1
    Official Full Name
    Mannose-binding lectin superfamily protein
    Primary source
    TAIR:AT3G16470
    Locus tag
    AT3G16470
    See related
    Araport:AT3G16470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    jacalin-related lectin 35; JAL35; JASMONATE RESPONSIVE 1; T2O4.6
    Summary
    JA-responsive gene
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    Genomic context

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    See JR1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (5595282..5599224, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene myrosinase-binding protein-like protein-300B Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene mitochondrial processing peptidase alpha subunit Neighboring gene IQ-domain 26

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tunicamycin-induced inhibition of protein secretion into culture medium of Arabidopsis T87 suspension cells through mRNA degradation on the endoplasmic reticulum. Iwata Y, et al. Biosci Biotechnol Biochem, 2016 Jun. PMID 26923805
    2. Influx of extracellular Ca2+ involved in jasmonic-acid-induced elevation of [Ca2+]cyt and JR1 expression in Arabidopsis thaliana. Sun QP, et al. J Plant Res, 2006 Jul. PMID 16708291
    3. JACALIN-LECTIN LIKE1 Regulates the Nuclear Accumulation of GLYCINE-RICH RNA-BINDING PROTEIN7, Influencing the RNA Processing of FLOWERING LOCUS C Antisense Transcripts and Flowering Time in Arabidopsis. Xiao J, et al. Plant Physiol, 2015 Nov. PMID 26392261, Free PMC Article
    4. Jasmonic acid-dependent and -independent wound signal transduction pathways are differentially regulated by Ca2+/calmodulin in Arabidopsis thaliana. León J, et al. Mol Gen Genet, 1998 May. PMID 9648747
    5. A downstream mediator in the growth repression limb of the jasmonate pathway. Yan Y, et al. Plant Cell, 2007 Aug. PMID 17675405, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. mRNA destabilization is the major cause of the inhibition of protein secretion in plants.
      Title: Tunicamycin-induced inhibition of protein secretion into culture medium of Arabidopsis T87 suspension cells through mRNA degradation on the endoplasmic reticulum.
    2. The jasmonic acid signalling pathway, including the role of calcium metabolism, in A. thaliana is reported.
      Title: Influx of extracellular Ca2+ involved in jasmonic-acid-induced elevation of [Ca2+]cyt and JR1 expression in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338233.1
    NM_112518.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid TAS
    Traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Mannose-binding lectin superfamily protein
    NP_001189913.1
    • JASMONATE RESPONSIVE 1 (JR1); INVOLVED IN: response to jasmonic acid stimulus, response to cold, response to wounding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT3G21380.1).
    NP_001319568.1
    • JASMONATE RESPONSIVE 1 (JR1); INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, response to cold, response to wounding; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566547.2
    • JASMONATE RESPONSIVE 1 (JR1); INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, response to cold, response to wounding; LOCATED IN: chloroplast, nucleus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 1845 Blast hits to 772 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1837; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5595282..5599224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202984.2 → NP_001189913.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189913.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F7T7, Q8LBW1
      Conserved Domains (2) summary
      PLN02193
      Location:1 → 178
      PLN02193; nitrile-specifier protein
      pfam01419
      Location:163 → 294
      Jacalin; Jacalin-like lectin domain

    2. NM_001338234.1 → NP_001326890.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQM9, Q8LBW1

    3. NM_112518.5 → NP_566547.2  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566547.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2P0, O04309, Q56Z22
      UniProtKB/TrEMBL
      A0A178VLL2, A0A5S9XCQ9
      Conserved Domains (1) summary
      pfam01419
      Location:317 → 448
      Jacalin; Jacalin-like lectin domain

    4. NM_001338233.1 → NP_001319568.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQM9, Q8LBW1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04309.1

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