U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EF hand calcium-binding protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821262, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    EF hand calcium-binding protein family
    Primary source
    TAIR:AT3G03410
    Locus tag
    AT3G03410
    See related
    Araport:AT3G03410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21P5.17; T21P5_17
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (811324..811719, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene EF hand calcium-binding protein family Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene Ku70-binding family protein Neighboring gene Calcium-binding EF-hand family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana. Song J, et al. J Biomol NMR, 2004 Dec. PMID 15630565
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NMR structure of calcium binding domain
      Title: Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_111212.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    EF hand calcium-binding protein family
    NP_186991.1
    • EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 14553 Blast hits to 10409 proteins in 1208 species: Archae - 0; Bacteria - 112; Metazoa - 5551; Fungi - 2786; Plants - 4039; Viruses - 0; Other Eukaryotes - 2065 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      811324..811719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111212.1 → NP_186991.1  EF hand calcium-binding protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186991.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0JPZ0, Q9SRP5
      UniProtKB/TrEMBL
      A0A178VEG7, A0A5S9X8Q7
      Conserved Domains (1) summary
      PTZ00184
      Location:4 → 128
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRP5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools