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    ECT6 evolutionarily conserved C-terminal region 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820996, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT6
    Official Full Name
    evolutionarily conserved C-terminal region 6
    Primary source
    TAIR:AT3G17330
    Locus tag
    AT3G17330
    See related
    Araport:AT3G17330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 6
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    Genomic context

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    See ECT6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (5916940..5920281, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene COMPLEX 1 LYR-like protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084699.1
    NM_001338284.1
    NM_112611.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 6
    NP_001078168.1
    • evolutionarily conserved C-terminal region 6 (ECT6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 7 (TAIR:AT1G48110.2); Has 957 Blast hits to 947 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 417; Fungi - 122; Plants - 332; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
    NP_188359.2
    • evolutionarily conserved C-terminal region 6 (ECT6); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 7 (TAIR:AT1G48110.2); Has 985 Blast hits to 959 proteins in 168 species: Archae - 0; Bacteria - 4; Metazoa - 419; Fungi - 125; Plants - 349; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5916940..5920281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112611.3 → NP_188359.2  evolutionarily conserved C-terminal region 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188359.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XCZ3, Q0WPP4, Q1JPL5
      Conserved Domains (1) summary
      pfam04146
      Location:270 → 412
      YTH; YT521-B-like domain

    2. NM_001084699.1 → NP_001078168.1  evolutionarily conserved C-terminal region 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078168.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MPR6, B9DGE5
      Conserved Domains (1) summary
      pfam04146
      Location:168 → 310
      YTH; YT521-B-like domain

    3. NM_001338284.1 → NP_001327579.1  evolutionarily conserved C-terminal region 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XCZ3, Q0WPP4, Q1JPL5
    Nucleotide Protein
    Heading Accession and Version

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