U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    flavodoxin family protein / radical SAM domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843857, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    flavodoxin family protein / radical SAM domain-containing protein
    Primary source
    TAIR:AT1G75200
    Locus tag
    AT1G75200
    See related
    Araport:AT1G75200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22H5.13; F22H5_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (28220626..28223785, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Erythronate-4-phosphate dehydrogenase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase Neighboring gene Major facilitator superfamily protein Neighboring gene DNA glycosylase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_106176.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA-4-demethylwyosine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    flavodoxin family protein / radical SAM domain-containing protein
    NP_177656.2
    • flavodoxin family protein / radical SAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, oxidoreductase activity, FMN binding, catalytic activity; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Radical SAM (InterPro:IPR007197), Wyosine base formation (InterPro:IPR013917); BEST Arabidopsis thaliana protein match is: P450 reductase 2 (TAIR:AT4G30210.2); Has 3108 Blast hits to 3089 proteins in 883 species: Archae - 191; Bacteria - 976; Metazoa - 668; Fungi - 593; Plants - 205; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28220626..28223785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106176.6 → NP_177656.2  flavodoxin family protein / radical SAM domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177656.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RXN5, Q9FRL1
      UniProtKB/TrEMBL
      A0A178W4L9, A0A5S9WUJ6, A0A654EZU9
      Conserved Domains (2) summary
      PRK13762
      Location:266 → 583
      PRK13762; 4-demethylwyosine synthase TYW1
      pfam00258
      Location:52 → 193
      Flavodoxin_1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXN5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools