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    Rho termination factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827608, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rho termination factor
    Primary source
    TAIR:AT4G18740
    Locus tag
    AT4G18740
    See related
    Araport:AT4G18740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28A21.150; F28A21_150
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (10303343..10304624, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Transcription factor IIS protein Neighboring gene tRNA-Glu Neighboring gene ribosomal protein L16B Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene receptor like protein 51

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor. Cho EJ, et al. Mol Cells, 2011 Nov. PMID 21909944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203834.2
    NM_001341303.1
    NM_117990.3
    NM_202840.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription termination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rho termination factor
    NP_001190763.1
    • Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112).
    NP_193609.2
    • Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 186 Blast hits to 184 proteins in 65 species: Archae - 0; Bacteria - 29; Metazoa - 45; Fungi - 8; Plants - 65; Viruses - 9; Other Eukaryotes - 30 (source: NCBI BLink).
    NP_974569.1
    • Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10303343..10304624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202840.2 → NP_974569.1  Rho termination factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974569.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F1W3, A0JQ06
      Conserved Domains (1) summary
      pfam07498
      Location:184 → 211
      Rho_N; Rho termination factor, N-terminal domain

    2. NM_117990.3 → NP_193609.2  Rho termination factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193609.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FQS8, F4JRN0
      Conserved Domains (1) summary
      pfam07498
      Location:211 → 242
      Rho_N; Rho termination factor, N-terminal domain

    3. NM_001203834.2 → NP_001190763.1  Rho termination factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190763.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F486, F4JRN1
      Conserved Domains (1) summary
      pfam07498
      Location:159 → 186
      Rho_N; Rho termination factor, N-terminal domain

    4. NM_001341303.1 → NP_001328471.1  Rho termination factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4Q9, A0A654FQS8
    Nucleotide Protein
    Heading Accession and Version

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