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    Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829423, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Primary source
    TAIR:AT4G32870
    Locus tag
    AT4G32870
    See related
    Araport:AT4G32870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16I18.80; T16I18_80
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (15862117..15862814)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nuclear poly(a) polymerase Neighboring gene Avr9/Cf-9 rapidly elicited protein Neighboring gene homeobox-leucine zipper protein ATHB-8 Neighboring gene GATA transcription factor 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_119440.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    NP_195013.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT2G25770.2); Has 254 Blast hits to 254 proteins in 94 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15862117..15862814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119440.3 → NP_195013.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195013.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZX9, A0A654FV16, Q9M073
      Conserved Domains (1) summary
      cd07821
      Location:10 → 154
      PYR_PYL_RCAR_like; Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins
    Nucleotide Protein
    Heading Accession and Version

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