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    Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829523, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase superfamily protein
    Primary source
    TAIR:AT4G33810
    Locus tag
    AT4G33810
    See related
    Araport:AT4G33810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L1.300; T16L1_300
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (16213174..16216310, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Jojoba acyl CoA reductase-related male sterility protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Glycosyl hydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables endo-1,4-beta-xylanase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Glycosyl hydrolase superfamily protein
    NP_195107.2
    • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G33820.1); Has 2034 Blast hits to 2025 proteins in 438 species: Archae - 10; Bacteria - 1170; Metazoa - 20; Fungi - 353; Plants - 270; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16213174..16216310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342235.1 → NP_001329678.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B8F8, F4JJU5, O81897
      UniProtKB/TrEMBL
      A0A178V2L6, A0A654FV79
      Conserved Domains (1) summary
      smart00633
      Location:248 → 498
      Glyco_10; Glycosyl hydrolase family 10

    2. NM_001342237.1 → NP_001329681.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B8F8, F4JJU5, O81897
      UniProtKB/TrEMBL
      A0A178V2L6, A0A654FV79

    3. NM_001342236.1 → NP_001329679.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B8F8, F4JJU5, O81897
      UniProtKB/TrEMBL
      A0A178V2L6, A0A654FV79
      Conserved Domains (1) summary
      smart00633
      Location:248 → 498
      Glyco_10; Glycosyl hydrolase family 10

    4. NM_119539.3 → NP_195107.2  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195107.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L6
      Conserved Domains (1) summary
      smart00633
      Location:208 → 458
      Glyco_10; Glycosyl hydrolase family 10

    5. NM_001342238.1 → NP_001329680.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8B8F8.1

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