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    Homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830071, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Homeodomain-like superfamily protein
    Primary source
    TAIR:AT4G39160
    Locus tag
    AT4G39160
    See related
    Araport:AT4G39160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F8.60; T22F8_60
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (18236278..18240478)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene ncRNA Neighboring gene Sec14p-like phosphatidylinositol transfer family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001204032.1
    NM_001342525.1
    NM_120076.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homeodomain-like superfamily protein
    NP_001190961.1
    • Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884).
    NP_001320166.1
    • Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); Has 3122 Blast hits to 2429 proteins in 310 species: Archae - 4; Bacteria - 140; Metazoa - 1075; Fungi - 294; Plants - 127; Viruses - 23; Other Eukaryotes - 1459 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18236278..18240478
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342525.1 → NP_001320166.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UU89, A0A384KMK1, A0A654FWV9, Q700D6
      Conserved Domains (2) summary
      COG5118
      Location:296 → 505
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:439 → 521
      Myb_DNA-bind_7; Myb DNA-binding like

    2. NM_001204032.1 → NP_001190961.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190961.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWV9, F4JVA4
      Conserved Domains (2) summary
      smart00717
      Location:446 → 493
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam15963
      Location:443 → 521
      Myb_DNA-bind_7; Myb DNA-binding like

    3. NM_120076.5 → NP_195627.2  Homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195627.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UU89, A0A384KMK1, A0A654FWV9, Q700D6
      Conserved Domains (2) summary
      COG5118
      Location:296 → 505
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:439 → 521
      Myb_DNA-bind_7; Myb DNA-binding like
    Nucleotide Protein
    Heading Accession and Version

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