U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    UBC13 ubiquitin-conjugating enzyme 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823796, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    UBC13
    Official Full Name
    ubiquitin-conjugating enzyme 13
    Primary source
    TAIR:AT3G46460
    Locus tag
    AT3G46460
    See related
    Araport:AT3G46460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ubiquitin-conjugating enzyme 13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See UBC13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (17095706..17097465, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP synthase Neighboring gene UDP-XYL synthase 5 Neighboring gene SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination. Yao D, et al. Mol Plant, 2021 Dec 6. PMID 34418551, Free PMC Article
    2. Arabidopsis OTU1, a linkage-specific deubiquitinase, is required for endoplasmic reticulum-associated protein degradation. Zang Y, et al. Plant J, 2020 Jan. PMID 31491807
    3. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Kraft E, et al. Plant Physiol, 2005 Dec. PMID 16339806, Free PMC Article
    4. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination.
      Title: Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001339250.1
    NM_001339251.1
    NM_114513.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-conjugating enzyme 13
    NP_566884.1
    • ubiquitin-conjugating enzyme 13 (UBC13); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 7 (TAIR:AT5G59300.1); Has 10290 Blast hits to 10255 proteins in 396 species: Archae - 0; Bacteria - 0; Metazoa - 4390; Fungi - 2251; Plants - 1992; Viruses - 23; Other Eukaryotes - 1634 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17095706..17097465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114513.6 → NP_566884.1  ubiquitin-conjugating enzyme 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566884.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42541, Q4TYZ7
      UniProtKB/TrEMBL
      A0A178V960, A0A5S9XIH4
      Conserved Domains (1) summary
      pfam00179
      Location:18 → 159
      UQ_con; Ubiquitin-conjugating enzyme

    2. NM_001339250.1 → NP_001325532.1  ubiquitin-conjugating enzyme 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTL7, A0A1I9LLI9, A0A5S9YG47

    3. NM_001339251.1 → NP_001325533.1  ubiquitin-conjugating enzyme 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTL7, A0A1I9LLI9, A0A5S9YG47
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42541.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools