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    A20/AN1-like zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824446, updated on 18-Sep-2024

    Summary

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    Official Full Name
    A20/AN1-like zinc finger family protein
    Primary source
    TAIR:AT3G52800
    Locus tag
    AT3G52800
    See related
    Araport:AT3G52800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (19569256..19570710)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Purple acid phosphatases superfamily protein Neighboring gene peptidoglycan-binding LysM domain-containing protein Neighboring gene purple acid phosphatase 21 Neighboring gene purple acid phosphatase 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115140.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    A20/AN1-like zinc finger family protein
    NP_190848.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1056 Blast hits to 1045 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 9; Plants - 478; Viruses - 6; Other Eukaryotes - 118 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19569256..19570710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339589.1 → NP_001325951.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B40, Q9LXI5
      UniProtKB/TrEMBL
      A0A178VIF4, A0A5S9XL14
      Conserved Domains (2) summary
      smart00154
      Location:111 → 148
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:14 → 36
      zf-A20; A20-like zinc finger

    2. NM_115140.3 → NP_190848.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190848.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B40, Q9LXI5
      UniProtKB/TrEMBL
      A0A178VIF4, A0A5S9XL14
      Conserved Domains (2) summary
      smart00154
      Location:111 → 148
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:14 → 36
      zf-A20; A20-like zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94B40.2

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