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    bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831018, updated on 14-Nov-2024

    Summary

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    Official Full Name
    bromo-adjacent homology (BAH) domain-containing protein
    Primary source
    TAIR:AT5G11470
    Locus tag
    AT5G11470
    See related
    Araport:AT5G11470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANTI-SILENCING 1; ASI1; F15N18.60; F15N18_60; IBM2; Increase in Bonsai Methylation 2; SG1; SHOOT GROWTH 1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (3662634..3668214, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CTC-interacting domain 5 Neighboring gene PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) Neighboring gene hypothetical protein (DUF581) Neighboring gene tRNA-Phe Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis RRM domain proteins EDM3 and IBM2 coordinate the floral transition and basal immune responses. Wang J, et al. Plant J, 2023 Oct. PMID 37347678
    2. RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1. Wang X, et al. Proc Natl Acad Sci U S A, 2013 Sep 17. PMID 24003136, Free PMC Article
    3. Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin. Saze H, et al. Nat Commun, 2013. PMID 23934508
    4. Genome-wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis. Zhang YZ, et al. J Integr Plant Biol, 2021 Apr. PMID 33438356
    5. Antagonistic Actions of FPA and IBM2 Regulate Transcript Processing from Genes Containing Heterochromatin. Deremetz A, et al. Plant Physiol, 2019 May. PMID 30814131, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Growth deficiency and enhanced basal immunity in Arabidopsis thaliana mutants of EDM2, EDM3 and IBM2 are genetically interlinked.
      Title: Growth deficiency and enhanced basal immunity in Arabidopsis thaliana mutants of EDM2, EDM3 and IBM2 are genetically interlinked.
    2. The Arabidopsis RRM domain proteins EDM3 and IBM2 coordinate the floral transition and basal immune responses.
      Title: The Arabidopsis RRM domain proteins EDM3 and IBM2 coordinate the floral transition and basal immune responses.
    3. Fpa is a genetic suppressor of Ibm2.A complex regulation by IBM2 and FPA pathways in processing mRNAs of genes bearing heterochromatic marks.
      Title: Antagonistic Actions of FPA and IBM2 Regulate Transcript Processing from Genes Containing Heterochromatin.
    4. our results suggest a function for SG1 in the maintenance of genome integrity by regulating IBM1. [SG1]
      Title: SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1.
    5. ASI1 associates with intronic heterochromatin and binds the gene transcripts to promote their 3' distal polyadenylation. [ASI1] [ANTI-SILENCING 1]
      Title: RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1.
    6. In Arabidopsis, full-length transcript formation over intragenic heterochromatin depends on a protein named IBM2 (Increase in Bonsai Methylation 2), which has a Bromo-Adjacent Homology domain and an RNA recognition motif. [IBM2]
      Title: Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001343193.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in epigenetic regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within epigenetic regulation of gene expression IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in gene silencing by siRNA-directed DNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within heterochromatin formation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within heterochromatin formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transposable element silencing by heterochromatin formation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of protein-containing complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bromo-adjacent homology (BAH) domain-containing protein
    NP_001318540.1
    • bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G15605.4); Has 602 Blast hits to 478 proteins in 106 species: Archae - 0; Bacteria - 17; Metazoa - 295; Fungi - 38; Plants - 91; Viruses - 4; Other Eukaryotes - 157 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3662634..3668214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343194.1 → NP_001331207.1  bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JXV7, Q9LYE3
      UniProtKB/TrEMBL
      A0A5S9Y396, A0A654G081
      Conserved Domains (1) summary
      cd04715
      Location:26 → 173
      BAH_Orc1p_like; BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic ...

    2. NM_001343193.1 → NP_001318540.1  bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y396
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYE3.2

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