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    rhomboid family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831054, updated on 18-Sep-2024

    Summary

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    Official Full Name
    rhomboid family protein
    Primary source
    TAIR:AT5G11810
    Locus tag
    AT5G11810
    See related
    Araport:AT5G11810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14F18.1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (3808678..3810748)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene N-MYC downregulated-like 2 Neighboring gene microRNA ath-MIR5629 precursor Neighboring gene K+ efflux antiporter 6 Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene YCF36, putative (DUF1230)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121219.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    rhomboid family protein
    NP_196742.1
    • unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3808678..3810748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121219.3 → NP_196742.1  rhomboid family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196742.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN28, A0A7G2FBZ1, Q9LYF0
      Conserved Domains (1) summary
      COG3635
      Location:70 → 165
      ApgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archeal type [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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