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    IPT5 isopentenyltransferase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832023, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IPT5
    Official Full Name
    isopentenyltransferase 5
    Primary source
    TAIR:AT5G19040
    Locus tag
    AT5G19040
    See related
    Araport:AT5G19040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5; ATIPT5; isopentenyltransferase 5; T16G12.80; T16G12_80
    Summary
    Encodes cytokinin synthase.
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    Genomic context

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    See IPT5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (6361776..6363713, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L34e superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene cytochrome P450 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Agrobacterium tumefaciens increases cytokinin production in plastids by modifying the biosynthetic pathway in the host plant. Sakakibara H, et al. Proc Natl Acad Sci U S A, 2005 Jul 12. PMID 15998742, Free PMC Article
    2. Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis. Kasahara H, et al. J Biol Chem, 2004 Apr 2. PMID 14726522
    3. Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Miyawaki K, et al. Proc Natl Acad Sci U S A, 2006 Oct 31. PMID 17062755, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables AMP dimethylallyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables ATP/ADP dimethylallyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables tRNA dimethylallyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    isopentenyltransferase 5
    NP_001318596.1
    • isopentenyltransferase 5 (IPT5); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 7 (TAIR:AT3G23630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6361776..6363713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343584.1 → NP_001318596.1  isopentenyltransferase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94IC9, Q94ID2
      UniProtKB/TrEMBL
      A0A5S9Y5F6, A0A654G2E0

    2. NM_001343585.1 → NP_001332154.1  isopentenyltransferase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94IC9, Q94ID2
      UniProtKB/TrEMBL
      A0A5S9Y5F6, A0A654G2E0

    3. NM_121909.2 → NP_197405.1  isopentenyltransferase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197405.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94IC9, Q94ID2
      UniProtKB/TrEMBL
      A0A5S9Y5F6, A0A654G2E0
      Conserved Domains (2) summary
      pfam13671
      Location:35 → 183
      AAA_33; AAA domain
      cl21455
      Location:31 → 297
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94ID2.2

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