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    Disease resistance protein (NBS-LRR class) family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834003, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Disease resistance protein (NBS-LRR class) family
    Primary source
    TAIR:AT5G40060
    Locus tag
    AT5G40060
    See related
    Araport:AT5G40060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUD12.40; MUD12_40
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (16034441..16039096)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein family Neighboring gene F-box/FBD-like domains containing protein Neighboring gene MADS-box family protein Neighboring gene Mitochondrial ribosomal protein L27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344314.1
    NM_123369.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Disease resistance protein (NBS-LRR class) family
    NP_198822.3
    • Disease resistance protein (NBS-LRR class) family; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 17753 Blast hits to 12088 proteins in 513 species: Archae - 14; Bacteria - 834; Metazoa - 1404; Fungi - 80; Plants - 14776; Viruses - 4; Other Eukaryotes - 641 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16034441..16039096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123369.4 → NP_198822.3  Disease resistance protein (NBS-LRR class) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198822.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KFY1, Q0WVE0
      Conserved Domains (7) summary
      cd09293
      Location:463 → 651
      AMN1; Antagonist of mitotic exit network protein 1
      smart00382
      Location:13 → 150
      AAA; ATPases associated with a variety of cellular activities
      COG4886
      Location:394 → 664
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:366 → 396
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:582 → 610
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam07725
      Location:418 → 436
      LRR_3; Leucine Rich Repeat
      cl21455
      Location:17 → 144
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001344314.1 → NP_001331514.1  Disease resistance protein (NBS-LRR class) family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BE50, Q0WVE0
    Nucleotide Protein
    Heading Accession and Version

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