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    Ribosomal protein S16 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835796, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S16 family protein
    Primary source
    TAIR:AT5G56940
    Locus tag
    AT5G56940
    See related
    Araport:AT5G56940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MHM17.5; MHM17_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (23030747..23032411)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cystatin/monellin superfamily protein Neighboring gene CCCH-type zinc finger family protein Neighboring gene nucleosome assembly protein 1;3 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Substitution of the gene for chloroplast RPS16 was assisted by generation of a dual targeting signal. Ueda M, et al. Mol Biol Evol, 2008 Aug. PMID 18453549
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125076.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S16 family protein
    NP_200504.1
    • Ribosomal protein S16 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: mitochondrion, ribosome, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: small subunit ribosomal protein 16 (TAIR:AT4G34620.1); Has 8528 Blast hits to 8528 proteins in 2923 species: Archae - 0; Bacteria - 5438; Metazoa - 128; Fungi - 129; Plants - 517; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23030747..23032411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125076.4 → NP_200504.1  Ribosomal protein S16 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200504.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LDI6, Q9LTS6
      UniProtKB/TrEMBL
      A0A178UPP3, A0A5S9YEN8, A0A654GBV3
      Conserved Domains (1) summary
      TIGR00002
      Location:3 → 83
      S16; ribosomal protein S16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTS6.1

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