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    Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836592, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative endonuclease or glycosyl hydrolase
    Primary source
    TAIR:AT5G64710
    Locus tag
    AT5G64710
    See related
    Araport:AT5G64710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MVP7.3; MVP7_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25869222..25872269)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene neurofilament triplet H protein-like protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene ncRNA Neighboring gene Egg cell-secreted-like protein (DUF1278) Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two NYN domain containing putative nucleases are involved in transcript maturation in Arabidopsis mitochondria. Stoll B, et al. Plant J, 2016 Jan. PMID 26711866
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125867.3
    NM_203264.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial RNA 5'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative endonuclease or glycosyl hydrolase
    NP_201276.1
    • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G09840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974993.1
    • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G09840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25869222..25872269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125867.3 → NP_201276.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201276.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHJ3, A0A654GE73, Q8RX61, Q9FGG2
      Conserved Domains (3) summary
      cd08824
      Location:671 → 736
      LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
      cd10910
      Location:61 → 184
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      pfam14418
      Location:560 → 621
      OHA; OST-HTH Associated domain

    2. NM_203264.2 → NP_974993.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974993.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHJ3, F4KF33, Q8RX61
      Conserved Domains (3) summary
      cd08824
      Location:546 → 611
      LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
      cd10910
      Location:6 → 80
      limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
      pfam14418
      Location:433 → 496
      OHA; OST-HTH Associated domain
    Nucleotide Protein
    Heading Accession and Version

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