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    IAA9 indole-3-acetic acid inducible 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836693, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IAA9
    Official Full Name
    indole-3-acetic acid inducible 9
    Primary source
    TAIR:AT5G65670
    Locus tag
    AT5G65670
    See related
    Araport:AT5G65670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    INDOLE-3-ACETIC ACID 9; indole-3-acetic acid inducible 9; MPA24.1; MPA24_1
    Summary
    auxin (indole-3-acetic acid) induced gene
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    Genomic context

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    See IAA9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (26253408..26256544)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Zinc finger (C3HC4-type RING finger) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Aux/IAA proteins are phosphorylated by phytochrome in vitro. Colón-Carmona A, et al. Plant Physiol, 2000 Dec. PMID 11115889, Free PMC Article
    2. The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. Abel S, et al. J Mol Biol, 1995 Aug 25. PMID 7658471
    3. Protein-protein interactions among the Aux/IAA proteins. Kim J, et al. Proc Natl Acad Sci U S A, 1997 Oct 28. PMID 9342315, Free PMC Article
    4. Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. Li JF, et al. PLoS One, 2011. PMID 22096563, Free PMC Article
    5. Genetics of Aux/IAA and ARF action in plant growth and development. Liscum E, et al. Plant Mol Biol, 2002 Jun-Jul. PMID 12036262

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345703.1
    NM_180944.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within auxin-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    indole-3-acetic acid inducible 9
    NP_001318885.1
    • indole-3-acetic acid inducible 9 (IAA9); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2120 Blast hits to 2118 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 3; Plants - 2115; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_851275.1
    • indole-3-acetic acid inducible 9 (IAA9); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2126 Blast hits to 2124 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 3; Plants - 2121; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26253408..26256544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180944.3 → NP_851275.1  indole-3-acetic acid inducible 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851275.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38827, Q8LBP2, Q9FLH4
      UniProtKB/TrEMBL
      A0A178UR46, A0A5S9YI23, A0A654GEE8
      Conserved Domains (1) summary
      pfam02309
      Location:180 → 329
      AUX_IAA; AUX/IAA family

    2. NM_001345703.1 → NP_001318885.1  indole-3-acetic acid inducible 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UR46, F4JXI3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38827.1

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