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    ribosomal RNA processing-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832182, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosomal RNA processing-like protein
    Primary source
    TAIR:AT5G20600
    Locus tag
    AT5G20600
    See related
    Araport:AT5G20600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7C8.190; F7C8_190
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (6966178..6968033, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING-box 1 Neighboring gene TMEM192 family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 5 Neighboring gene EEIG1/EHBP1 protein amino-terminal domain protein Neighboring gene ubiquitin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Further evidence of microcolinearity between barley and rice genomes at two orthologous regions. Park YJ, et al. Mol Cells, 2004 Jun 30. PMID 15232225
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122067.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal RNA processing-like protein
    NP_197560.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6966178..6968033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122067.4 → NP_197560.2  ribosomal RNA processing-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197560.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FE07, Q8RY12
      Conserved Domains (1) summary
      pfam05997
      Location:22 → 223
      Nop52; Nucleolar protein,Nop52
    Nucleotide Protein
    Heading Accession and Version

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