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    DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839175, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA binding protein
    Primary source
    TAIR:AT1G26330
    Locus tag
    AT1G26330
    See related
    Araport:AT1G26330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28B23.2; F28B23_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (9107519..9113747)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Zinc-binding dehydrogenase family protein Neighboring gene cytochrome B5 isoform A Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001198170.1
    NM_102397.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding protein
    NP_001185099.1
    • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943).
    NP_173957.2
    • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9107519..9113747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102397.3 → NP_173957.2  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173957.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDZ7, A0A5S9VZJ2, F4IE61
      Conserved Domains (3) summary
      sd00039
      Location:864 → 926
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:1094 → 1184
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl02651
      Location:70 → 134
      FYRC; F/Y rich C-terminus

    2. NM_001198170.1 → NP_001185099.1  DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185099.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDZ7, A0A5S9VZJ2, F4IE60
      Conserved Domains (3) summary
      sd00039
      Location:869 → 931
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:1099 → 1189
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl02651
      Location:75 → 139
      FYRC; F/Y rich C-terminus
    Nucleotide Protein
    Heading Accession and Version

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