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    WCRKC2 WCRKC thioredoxin 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830305, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WCRKC2
    Official Full Name
    WCRKC thioredoxin 2
    Primary source
    TAIR:AT5G04260
    Locus tag
    AT5G04260
    See related
    Araport:AT5G04260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19N18.5; WCRKC thioredoxin 2
    Summary
    Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif.
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    Genomic context

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    See WCRKC2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (1178644..1180060, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein Neighboring gene Cysteine proteinases superfamily protein Neighboring gene uncharacterized protein Neighboring gene DHHC-type zinc finger family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Thioredoxin-like2/2-Cys peroxiredoxin redox cascade supports oxidative thiol modulation in chloroplasts. Yoshida K, et al. Proc Natl Acad Sci U S A, 2018 Aug 28. PMID 30104347, Free PMC Article
    2. A novel extended family of stromal thioredoxins. Cain P, et al. Plant Mol Biol, 2009 Jun. PMID 19259774
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120508.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell redox homeostasis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WCRKC thioredoxin 2
    NP_196046.2
    • WCRKC thioredoxin 2 (WCRKC2); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC thioredoxin 1 (TAIR:AT5G06690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1178644..1180060 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120508.4 → NP_196046.2  WCRKC thioredoxin 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196046.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZT6, Q9FYD5
      UniProtKB/TrEMBL
      A0A5S9Y1A0, A0A654FYP1
      Conserved Domains (1) summary
      cd02947
      Location:85 → 187
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZT6.1

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