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    GLP9 germin-like protein 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827113, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GLP9
    Official Full Name
    germin-like protein 9
    Primary source
    TAIR:AT4G14630
    Locus tag
    AT4G14630
    See related
    Araport:AT4G14630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3355W; FCAALL.278; germin-like protein 9
    Summary
    germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.
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    Genomic context

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    See GLP9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (8392825..8393860)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene sporulation-specific protein Neighboring gene hypothetical protein (DUF506) Neighboring gene calmodulin 8 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana contains a large family of germin-like proteins: characterization of cDNA and genomic sequences encoding 12 unique family members. Carter C, et al. Plant Mol Biol, 1998 Dec. PMID 9869400
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117545.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plant-type vacuole ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    germin-like protein 9
    NP_193199.1
    • germin-like protein 9 (GLP9); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to salt stress; LOCATED IN: extracellular region, plasma membrane, plant-type vacuole; EXPRESSED IN: stem, hypocotyl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39110.1); Has 1524 Blast hits to 1518 proteins in 95 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 42; Plants - 1455; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8392825..8393860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117545.4 → NP_193199.1  germin-like protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193199.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23319, Q9LEA7
      UniProtKB/TrEMBL
      A0A654FPN6, Q56XY5
      Conserved Domains (1) summary
      pfam00190
      Location:65 → 216
      Cupin_1; Cupin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LEA7.2

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