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    AHL20 AT-hook motif nuclear-localized protein 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827093, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AHL20
    Official Full Name
    AT-hook motif nuclear-localized protein 20
    Primary source
    TAIR:AT4G14465
    Locus tag
    AT4G14465
    See related
    Araport:AT4G14465
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-hook motif nuclear-localized protein 20
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    Genomic context

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    See AHL20 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (8320538..8322352)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Target SNARE coiled-coil domain protein Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene SMAD/FHA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of AHL20 negatively regulates defenses in Arabidopsis. Lu H, et al. J Integr Plant Biol, 2010 Sep. PMID 20738724
    2. Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression. Tayengwa R, et al. BMC Plant Biol, 2020 Dec 11. PMID 33308168, Free PMC Article
    3. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression.
      Title: Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117526.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-hook motif nuclear-localized protein 20
    NP_567432.1
    • AT-hook motif nuclear-localized protein 20 (AHL20); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 19 (TAIR:AT3G04570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8320538..8322352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117526.4 → NP_567432.1  AT-hook motif nuclear-localized protein 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567432.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWQ2, Q8LAV4
      UniProtKB/TrEMBL
      A0A178UZ13, A0A5S9XS99
      Conserved Domains (1) summary
      cd11378
      Location:95 → 178
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWQ2.1

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